Cheap Hotels in San Diego

Compare rates for 3 budget-friendly San Diego hotels in Mission Valley, Mission Bay, and Bayside. Book now for exclusive savings.

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Check-out
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Rooms and Guests2 Guests, 1 room
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1-19 out of 19
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  • Popularity: high to low
8.2
Great1293 total reviews
our site & Booking.com
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9.6 km from City Centre500 m from Belmont Park
Private BeachSeal SanctuaryResort Ferry
  • Private beach on Mission Bay
  • Rescue seal sanctuary on-site
  • Tropical gardens with pond
From£ 70 /nightSelect
8.4
Great2145 total reviews
our site & Booking.com
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6.6 km from City Centre200 m from Shelter Island Yacht Basin
Private MarinaBlue Wave GrillTennis Court
  • Private marina on Shelter Island
  • Complimentary bike and fishing rentals
  • Bungalow rooms with marina views
From£ 74 /nightSelect
8.7
Great1770 total reviews
our site & Booking.com
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6.2 km from City Centre200 m from Humphreys Backstage Live
Concert VenueHeated PoolKoi Pond
  • On-site outdoor concert venue
  • Tropical grounds with koi ponds
  • Marina and bay views
From£ 109 /nightSelect
8.1
Great349 total reviews
our site & Booking.com
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1.5 km from City Centre800 m from Petco Park
Walk-In ShowersBarLuggage Storage
  • Modern-historic design blend
  • 10-minute walk to Santa Fe Depot
  • Personalized guest experience
From£ 80 /nightSelect
8.0
Great3484 total reviews
our site & Booking.com
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1.6 km from City Centre700 m from USS Midway Museum
Airport ShuttlePrivate BalconyOn-site Steakhouse
  • Bay-view balconies in every room
  • Free airport shuttle every 30 mins
  • Adjacent to cruise ship terminal
From£ 92 /nightSelect
7.8
Very good2897 total reviews
our site & Booking.com
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3.9 km from City Centre1000 m from Fashion Valley Mall
Heated PoolGolf CourseBusiness Center
  • Independent, family-owned hotel
  • Adjacent to Riverwalk Golf Club
  • Ranch-inspired architecture style
From£ 76 /nightSelect
8.4
Great1489 total reviews
our site & Booking.com
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8.5 km from City Centre1.1 km from SeaWorld San Diego
Firefly RestaurantComplimentary ShuttleTropical Landscaping
  • No resort fees charged
  • Complimentary shuttle to SeaWorld
  • Pet-friendly with arrival kits
From£ 73 /nightSelect
8.7
Great1695 total reviews
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1.2 km from City Centre1000 m from USS Midway Museum
Heated PoolHot TubAirport Shuttle
  • Views of historic Star of India
  • Balconies with skyline views
  • Complimentary hot breakfast buffet
From£ 113 /nightSelect
8.1
Great4996 total reviews
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6.2 km from City Centre300 m from Woodbury University
Free ParkingHeated PoolHot Tub
  • Free private parking included
  • Private balconies with harbor views
  • Complimentary to-go breakfast
From£ 91 /nightSelect
Kings InnHotel
8.4
Great2422 total reviews
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3.8 km from City Centre1.3 km from Hillcrest San Diego
Heated PoolWaffle SpotFitness Center
  • 1960s surf-culture inspired decor
  • Award-winning waffles at on-site restaurant
  • Heated pool and hot tub year-round
From£ 64 /nightSelect
7.9
Very good3108 total reviews
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3.7 km from City Centre1000 m from Fashion Valley Mall
Heated PoolHot TubBistro Lounge
  • Text front desk service
  • Near Sea World and Fashion Valley
  • Complimentary lobby popcorn and drinks
From£ 88 /nightSelect
7.9
Very good2109 total reviews
our site & Booking.com
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1.3 km from City Centre1000 m from USS Midway Museum
Rooftop PoolFitness CenterMeeting Rooms
  • Bay-view rooftop pool
  • Daily riddle in lobby
  • Opposite Waterfront Park
From£ 110 /nightSelect
8.3
Great815 total reviews
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2.0 km from City Centre300 m from Petco Park
Rooftop PoolFire PitFull Kitchens
  • Homemade cookies at reception
  • Outdoor fire pit lounge
  • Complimentary grocery service
From£ 183 /nightSelect
7.9
Very good1705 total reviews
our site & Booking.com
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800 m from City Centre1.4 km from Balboa Park
Outdoor PoolsFree ShuttleMeeting Space
  • Free shuttle to major attractions
  • Manager's reception with drinks
  • Rotating local breakfast options
From£ 88 /nightSelect
8.9
Great761 total reviews
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1.7 km from City Centre500 m from USS Midway Museum
Rooftop PoolFire PitsFitness Centre
  • Rooftop pool with bay views
  • Across from cruise terminal
  • Patio with fire pits
From£ 192 /nightSelect
8.2
Great408 total reviews
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5.6 km from City Centre700 m from Keller Graduate School of Mgmt
Outdoor PoolM ClubMeeting Space
  • Pool with waterfall and private cabanas
  • M Club with made-to-order breakfast
  • DEN Restaurant: American & Baja cuisine
From£ 130 /nightSelect
8.7
Great1967 total reviews
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17.1 km from City Centre700 m from La Jolla Cove
Heated PoolBike ToursGuest Lounge
  • In-room breakfast delivery option
  • Coin-operated snack machines only
  • Heated outdoor pool for leisure
From£ 100 /nightSelect
8.2
Great843 total reviews
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1.2 km from City Centre1.1 km from USS Midway Museum
Heated PoolFitness CentreAirport Shuttle
  • Complimentary wine and beer evenings
  • Grocery shopping service for suites
  • Spacious suites with full kitchens
From£ 110 /nightSelect
7.0
Very good1677 total reviews
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1000 m from City Centre1.4 km from USS Midway Museum
Rooftop PoolAirport ShuttleArt Exhibits
  • Adults-only boutique hotel
  • Rooftop heated mini-pool with spa jets
  • Rotating art installations throughout
From£ 94 /nightSelect

San Diego offers a range of affordable hotels that provide excellent value for budget-conscious travelers. For nightly rates under $150, visitors can choose from properties like the San Diego Marriott Mission Valley, which features an outdoor pool with a waterfall and private cabanas, along with a fire pit for evening relaxation. The Bahia Resort Hotel overlooks Mission Bay and offers a private beach, a 30-person hot tub, and suites with kitchenettes-ideal for families seeking a beachfront base. Meanwhile, the Wyndham San Diego Bayside sits on the bay opposite the cruise terminal and provides three on-site restaurants, bay-view rooms, and easy access to the Gaslamp Quarter and Convention Center via the San Diego Trolley.

These hotels cater to different traveler needs: Marriott Mission Valley suits business and family trips with its airport proximity and family-friendly amenities; Bahia Resort is perfect for romantic getaways or family vacations with its private beach and tennis courts; Wyndham Bayside appeals to couples and business travelers due to its central location and bay views. When booking cheap hotels in San Diego, consider that parking costs vary-Bahia offers free parking, while Marriott and Wyndham charge fees. For the best rates, book directly on the hotel website or use comparison tools. Most of these hotels are within a 15-minute drive of top attractions like the San Diego Zoo and SeaWorld.